PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00123g01118.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 530aa    MW: 59077.4 Da    PI: 8.2407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00123g01118.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10415462448
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
  Peaxi162Scf00123g01118.1 415 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 462
                               ***************************999****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.016407466IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-14408469IPR009057Homeodomain-like
SMARTSM007171.2E-11411464IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-16414472IPR009057Homeodomain-like
CDDcd116603.05E-20415463No hitNo description
PfamPF002491.1E-7415462IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLILEPHADH SSVSGVVCFD EKRVIKGMER ESFLYSIDSS IARKREGGIN QEVLDLKQSH  60
FGAGKIQAQN DLSSTCEDYL LDIEFAESIT NLDYGSSKGL LDPILESQIP LSSSDGTDAC  120
GMSYSSGLAV QEAQSQNAVF GLTNSELHDL SPNKCEGQML LDYNAVKFPT TFTPGDISNV  180
DDVADFFAED ASSEKMNDSL VDHSALTSKR NSFMSNATQN EGLDVDRESY DMHESLAAIS  240
PPATSQAMNI DAPLTQKRLR KPTRRYIDES SDLNATRPRK KGEVSTPASK DKLLRVRCQK  300
KSRTESMEAE FFPEESSCIA IQVPFASLGN EECHKRHASN AIQVPKSHME AVVLKSHKES  360
AVLKSHKEAT VLKSHKDATV LKSHKDATVV DSRDDAGAHK NLDQDGTRRK HHRLWTVSEV  420
RKLIDGVAQY GVGRWSHIKK LYFSSSVHRT PVDLKDKWRN LLKASYLQKQ SKITGKGKHN  480
LSWRPLPKSI LHRVSELANM HPYPRNQRCK RSHSPSPPSS PMHTNKNNIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605404.10.0PREDICTED: uncharacterized protein LOC104099973 isoform X1
RefseqXP_016452320.10.0PREDICTED: uncharacterized protein LOC107776885 isoform X1
TrEMBLK4CQI80.0K4CQI8_SOLLC; Uncharacterized protein
STRINGSolyc09g007990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.26e-30TRF-like 6